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BLAST
Parameters
Output format:
Blastscope (2.2.8)
BLAST default format (2.2.24)
Program
:
blastn (DNA query vs. DNA database)
tblastx (DNA query [translated into protein] vs. DNA database [translated into protein])
tblastn (Protein query vs. DNA database [translated into protein])
Database:
D.auraria adult full-length cDNA clone, 5' and 3' end. (38,110 sequences)
D.sechellia adult full-length cDNA clone, 5' and 3' end. (38,257 sequences)
D.simulans adult female full-length cDNA clone, 5' and 3' end. (37,253 sequences)
D.simulans adult male full-length cDNA clone, 5' and 3'end. (38,157 sequences)
D.simulans larvae full-length cDNA clone, 5' and 3' end. (38,319 sequences)
Please specify the sequence data to reference.
File Upload:
or COPY & PASTE:
Options for BLAST Search
Filter
:
ON
OFF
Expect
:
Matrix
:
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Query Genetic Codes
:
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty
for blastx:
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Other options
:
Options for BLASTScope
Sort Hits order by
:
Hit Number
bit score
query from
definition
alignment length
Number of Hits
:
All Hits
Limit:
Hits
Number of HSPs
:
All HSPs
Limit :
HSPs
Limit results by alignment length
:
>
Limit results by range of query sequence
:
-
Image width
: